External Movement - back in the early 2000s, having Microsoft on your resume would open doors. While it's still relatively true (recruiters from FB, GOOG, AMZN will always try to recruit you) getting into smaller companies is hard. I had a few interviews that had a clear bias towards my experience because Microsoft was seen to be "old school" in their software development practices.
The Lifers - Sensitive topic, but there are some folks who basically understand the security of their job at Microsoft [see pro]. There are several people who are waiting for retirement and are working 10 am - 4pm hours. This is hard because they tend to resist any change or are non-responsive if you email them at 4:01 PM. It's hard to feel everyone has a shared passion for what they're working on.
The ball drop - Ultimately, somebody down the chain drops the ball. A project with a ton of passionate engineers delivers but the hardware team drops the ball and creates garbage. Or a perfect device but marketing creates these commercials that look like something my 3 year old made. Or a great platform with no ecosystem because the developer tools are hard to use.
The rat race - at some point in my 9 years, I subscribed to the idea of 'get promoted, otherwise I'm not growing!' Because the entire pay grade and responsibility is tied to your level, it's somewhat true, but when people start working the system, they are merely trying to get promotions (visible projects, taking on responsibilities at the next level) and not deliver solid work at their current level. I've seen projects where senior engineers were off trying to find things to get them to principle while they let their SDEs and SDE 2's architect the project. The code was a mess and I was surprised it didn't deadlock more often, but these are things that could have been fixed if their seniors architected the project instead of making them do the cross-team integration work. Not great if those engineers want to code but are being forced into PM-ish sort of roles. It's easy to get sucked into the need of perpetual promotions.